.. catcheR documentation master file, created by
   sphinx-quickstart on Tue Jul 15 11:40:23 2025.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

catcheR documentation
=====================

**catcheR** is a comprehensive bioinformatic package for designing and analyzing iPS2-seq experiments.


.. toctree::
   :maxdepth: 2
   :caption: Contents:
   
   gettingstarted
   catcheR_design
   catcheR_step1QC
   catcheR_step2QC
   catcheR_scicounts
   catcheR_10Xcatch
   catcheR_10XcatchQC
   catcheR_filtercatch
   catcheR_10Xnocatch
   catcheR_merge
   catcheR_scicatch
   catcheR_scicatchQC
   catcheR_scinocatch
   catcheR_sortcatch
   catcheR_load
   catcheR_pseudotime
   catcheR_modules
   catcheR_enrichment