catcheR_scinocatch - Identify cells expressing no shRNA in iPS2-sci-seqΒΆ

Run catcheR_scinocatch() following the steps described for catcheR_10Xnocatch() in par-SPFourParFour.

This function shares the same arguments and outputs but is used for sci-seq data, operating on the output of catcheR_scicatch().

catcheR_scinocatch(
    group = "docker",
    folder = "path/to/working/folder",
    expression.matrix = "filename.csv",
    threshold = 5,
    reference = "TACGCGTTCATCTGGGGGAG")

cellID_?_empty_NA_empty