Index
catcheR
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Contents:
Getting started
catcheR_design - Oligonucleotide Design
catcheR_step1QC - Pooled Cloning Step 1 QC
catcheR_step2QC - Pooled Cloning Step 2 and hiPSC Genome Editing QC
catcheR_scicounts - Obtain iPS2-sci-seq Count Matrices
catcheR_10Xcatch - iPS2-10X-seq Perturbation Deconvolution
catcheR_10XcatchQC - Fine-Tune iPS2-10X-seq Perturbation Assignment
catcheR_filtercatch - Fine-Tune iPS2-10X-seq Perturbation Assignment
catcheR_10Xnocatch - Identify cells expressing no shRNA
catcheR_merge - Merge multiple samples
caycheR_scicatch - iPS2-sci-seq perturbation deconvolution
catcheR_scicatchQC - Fine-tune iPS2-sci-seq perturbation assignment
catcheR_scinocatch - Identify cells expressing no shRNA in iPS2-sci-seq
catcheR_sortcatch - Barcode reassignment
catcheR_load - Data loading
catcheR_pseudotime - Pseudotime
catcheR_modules - Gene Modules
catcheR_enrichment - Enrichment / Depletion Analysis
Related Topics
Documentation overview